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Spotlight Jul 22

Featured Spotlight

Metabolite Glues as Purine Sensors and Chemotherapeutic Targets: Implications for Drug Discovery, MS-Based Screening, and Omics Landscape

Analysis Briefing

All briefings

7-DAY ROUNDUP

Metaproteomics standardization advances; microbiome studies link dysbiosis to disease risk.

  1. Great Barrier Reef Microbial Genomes Database constructed via hybrid Nanopore and Illumina sequencing (nature.com) | 5d ago
  2. Standardization and open data practices in metaproteomics: community reporting checklist (microbiomejournal.biomedcentral.com) | 4d ago
  3. Immunosuppression linked to loss of airway microbiome stability in severe COVID-19 patients (microbiomejournal.biomedcentral.com) | 4d ago
  4. Metatranscriptomics reveals osmoregulatory strategies in pink biofilms on salt-weathered historic buildings in Austria (microbiomejournal.biomedcentral.com) | 27d ago
  5. Cesarean section-induced gut dysbiosis increases risk of obesity and insulin resistance in high-fat diet mouse model (microbiomejournal.biomedcentral.com) | 5d ago
  6. Metagenomic analysis reveals gut microbiota compositional and functional shifts in female IBS patients (nature.com) | 26d ago
  7. Longitudinal microbial source tracking on China Space Station identifies cargo and cabin contributions (microbiomejournal.biomedcentral.com) | 59d ago
  8. Metaproteomics Initiative Reviews Five Years of Community-Driven Standardization and Benchmarking (microbiomejournal.biomedcentral.com) | 4d ago
  9. Ethical challenges and co-laboration framework for global human microbiome research (link.springer.com) | 111d ago
  10. Integrative Multi-Omics Analysis of Cecal Microbiome in BXD Mice Reveals Diet, Age, and Genotype Effects on Host Phenotypes (microbiomejournal.biomedcentral.com) | 76d ago
  11. Study quantifies functional recovery limitations of whole metagenome sequencing depth in oral microbiome of Nigerian youths (microbiomejournal.biomedcentral.com) | 32d ago
  12. Integrated metatranscriptomics identifies Lachnospiraceae as keystone taxa regulating rumen biohydrogenation and milk ω-6/ω-3 polyunsaturated fatty acids ratio in dairy cows (microbiomejournal.biomedcentral.com) | 105d ago
  13. Environmental reservoirs and transmission pathways of antimicrobial resistance across the pork production continuum (microbiomejournal.biomedcentral.com) | 6d ago
  14. Metagenomic analysis of wild boar faecal microbiome reveals novel species and carbohydrate degraders distinguishing wild from domestic pigs (microbiomejournal.biomedcentral.com) | 116d ago
  15. Rhizobacterial functional assemblies modulate DEHP accumulation in choysum (Brassica parachinensis L.) (microbiomejournal.biomedcentral.com) | 6d ago
  16. Multi-omics study reveals rumen microbiome-metabolite associations with early lactation performance in dairy cows (microbiomejournal.biomedcentral.com) | 111d ago
  17. Stochastic assembly influences functional potential, redundancy, and trait patterns in bacterial communities (microbiomejournal.biomedcentral.com) | 48d ago
  18. Chinese household dust microbiome study quantifies pathogen abundance, virulence factors, and extracellular vesicle contributions (microbiomejournal.biomedcentral.com) | 98d ago
  19. Multi-body site microbial interactions shape the human plasma metabolome (microbiomejournal.biomedcentral.com) | 109d ago
  20. Study validates mRNA-seq for simultaneous host transcriptome and microbiome profiling in vulvar samples (ncbi.nlm.nih.gov) | 88d ago
  21. Population-based characterization of child and adolescent oral bacterial microbiome using 16S rRNA sequencing in Canada (microbiomejournal.biomedcentral.com) | 27d ago
  22. Asparagopsis taxiformis supplementation reduces methane yield by 54% in dairy cows via vitamin B12-dependent pathway modulation and rumen microbiome restructuring (microbiomejournal.biomedcentral.com) | 45d ago
  23. Review of the seed microbiome: composition, functions, and research gaps (microbiomejournal.biomedcentral.com) | 114d ago
  24. Precisely designed keystone metabolites boost shrimp disease resistance by recruiting symbionts via the lipoxin A4–AP-1 pathway (microbiomejournal.biomedcentral.com) | 26d ago
  25. Bacillus megaterium KCTC 3007 promotes antitumor immunity in endometrial cancer via TMAO and type I interferon: a multi-omics study on South Korean patients (microbiomejournal.biomedcentral.com) | 98d ago
  26. Shotgun metagenomic analysis of gut microbiota in Swedish female IBS patients reveals modest compositional and functional shifts (nature.com) | 68d ago
  27. SEVA model integrates protein language models with structural and evolutionary features to predict virulence factors and antibiotic resistance genes (microbiomejournal.biomedcentral.com) | 9d ago
  28. mRNA-seq enables simultaneous host transcriptome and microbiome profiling in vulvar samples (microbiomejournal.biomedcentral.com) | 81d ago
  29. Neighborhood deadwood and yard rewilding modulate commensal microbiomes and inflammatory signals among urbanites (static-content.springer.com) | 62d ago
  30. Multi-omics analysis links rumen bacterial communities to sheep fertility across reproductive stages (microbiomejournal.biomedcentral.com) | 75d ago
  31. Neighborhood deadwood and yard rewilding modulate commensal microbiomes and inflammatory signals among urbanites (microbiomejournal.biomedcentral.com) | 62d ago
  32. Yard rewilding with deadwood alters skin and oral microbiomes and inflammatory markers in Finnish study (microbiomejournal.biomedcentral.com) | 73d ago
  33. Convergent evolution of intestinal lineages in the phylum Methanobacteriota (microbiomejournal.biomedcentral.com) | 86d ago
  34. Human Microprotein Atlas platform annotates over 600,000 microproteins (nature.com) | 76d ago
  35. Metagenomics and culturomics reveal dual role of gut microbiome in immune checkpoint inhibitor therapy (microbiomejournal.biomedcentral.com) | 84d ago
  36. Metatranscriptomic analysis of tumor tissue microbiota in colon cancer (microbiomejournal.biomedcentral.com) | 76d ago
  37. Multi-omics study reveals microbial decomposer network during brine shrimp carcass decomposition in a Chinese hypersaline lake (microbiomejournal.biomedcentral.com) | 118d ago
  38. Seed Microbiome: Composition, Functions, and Future Directions in Plant Health and Sustainable Agriculture (link.springer.com) | 26d ago
  39. Longitudinal study links salivary microbiome changes to chemoradiotherapy response in oral cancer patients (microbiomejournal.biomedcentral.com) | 970d ago
  40. Salivary microbiome changes distinguish response to chemoradiotherapy in patients with oral cancer (link.springer.com) | 1122d ago
  41. Ethical framework for global human microbiome research advocates co-laboration to address Western bias (link.springer.com) | 26d ago
  42. Ethical concerns in human microbiome research: bias, inclusion, and co-laboration framework (microbiomejournal.biomedcentral.com) | 111d ago
  43. Multi-omics reveals effects of several rumen bacteria on reproductive performance of sheep (microbiomejournal.biomedcentral.com) | 62d ago
  44. Loss of Salivary Agglutinin (DMBT1) Alters Salivary Microbiome and Accelerates Oral Squamous Cell Carcinoma Development in Mice (microbiomejournal.biomedcentral.com) | 108d ago
  45. Cystic fibrosis respiratory microbiota remodelling over three years of elexacaftor–tezacaftor–ivacaftor therapy in a multi-centre cohort (microbiomejournal.biomedcentral.com) | 58d ago
  46. Black soldier fly larvae use compartmentalized immune regulation to recruit lignocellulose-degrading gut symbionts (microbiomejournal.biomedcentral.com) | 48d ago
  47. Study identifies Pantoea ananatis as a regulator of adaptive thermogenesis and lipid metabolism in high-altitude macaques (microbiomejournal.biomedcentral.com) | 60d ago
  48. RNA-seq reveals active microbiome functional roles across coral Porites lutea compartments (microbiomejournal.biomedcentral.com) | 86d ago
  49. Gastrointestinal microbial nitrogen metabolism shapes nitrogen use efficiency in goats fed soybean meal vs. corn gluten meal (microbiomejournal.biomedcentral.com) | 98d ago
  50. Commentary calls for ethical, locally led microbiome research to address global inequities (microbiomejournal.biomedcentral.com) | 111d ago
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